Publications

  1. Guo, S., Tao, H., Gao, G., Mhatre, S., Lu, Y., Takagi, A., Li, J., Mo, L., Rojas, O.J., and Chu, G. (2023). All-Aqueous Bicontinuous Structured Liquid Crystal Emulsion through Intraphase Trapping of Cellulose Nanoparticles. Biomacromolecules 24, 367-376.
  2. Paul, M., Golla, K., and Kim, H. (2023). Gelsolin Modulates Platelet Dense Granule Secretion and Hemostasis via the Actin Cytoskeleton. Thromb Haemost 123, 219-230.
  3. Perez-Vargas, J., Shapira, T., Olmstead, A.D., Villanueva, I., Thompson, C.A.H., Ennis, S., Gao, G., De Guzman, J., Williams, D.E., Wang, M., et al. (2023). Discovery of lead natural products for developing pan-SARS-CoV-2 therapeutics. Antiviral Res 209, 105484.
  4. Price, R.M., Budzynski, M.A., Shen, J., Mitchell, J.E., Kwan, J.Z.J., and Teves, S.S. (2023). Heat shock transcription factors demonstrate a distinct mode of interaction with mitotic chromosomes. Nucleic acids research.
  5. Sadasivan, J., Hyrina, A., DaSilva, R., and Jan, E. (2023). An Insect Viral Protein Disrupts Stress Granule Formation in Mammalian Cells. Journal of molecular biology, 168042.
  6. Alan, P., Vandevoorde, K.R., Joshi, B., Cardoen, B., Gao, G., Mohammadzadeh, Y., Hamarneh, G., and Nabi, I.R. (2022). Basal Gp78-dependent mitophagy promotes mitochondrial health and limits mitochondrial ROS. Cellular and molecular life sciences : CMLS 79, 565.
  7. Dixon-McDougall, T., and Brown, C.J. (2022). Multiple distinct domains of human XIST are required to coordinate gene silencing and subsequent heterochromatin formation. Epigenetics Chromatin 15, 6.
  8. Peters, V., Deretic, N., Choi, K., and Gold, M.R. (2022). ERK contributes to B cell receptor-induced cell spreading in the A20 mouse B cell line. MicroPubl Biol 2022.
  9. Sadasivan, J., Vlok, M., Wang, X., Nayak, A., Andino, R., and Jan, E. (2022). Targeting Nup358/RanBP2 by a viral protein disrupts stress granule formation. PLoS pathogens 18, e1010598.
  10. Shapira, T., Monreal, I.A., Dion, S.P., Buchholz, D.W., Imbiakha, B., Olmstead, A.D., Jager, M., Desilets, A., Gao, G., Martins, M., et al. (2022). A TMPRSS2 inhibitor acts as a pan-SARS-CoV-2 prophylactic and therapeutic. Nature 605, 340-348.
  11. Bolger-Munro, M., Choi, K., Cheung, F., Liu, Y.T., Dang-Lawson, M., Deretic, N., Keane, C., and Gold, M.R. (2021). The Wdr1-LIMK-Cofilin Axis Controls B Cell Antigen Receptor-Induced Actin Remodeling and Signaling at the Immune Synapse. Frontiers in cell and developmental biology 9, 649433.
  12. Dixon-McDougall, T., and Brown, C.J. (2021). Independent domains for recruitment of PRC1 and PRC2 by human XIST. PLoS genetics 17, e1009123.
  13. Palia, P., Adams, A., Sriram, A., and Vogl, A.W. (2021). Cortactin knockdown results in disruption of basal TBCs and alters turnover of Sertoli cell ESs in R. norvegicus. Biology of reproduction.
  14. Siren, E.M.J., Luo, H.D., Tam, F., Montgomery, A., Enns, W., Moon, H., Sim, L., Rey, K., Guan, Q., Wang, J.J., et al. (2021). Prevention of vascular-allograft rejection by protecting the endothelial glycocalyx with immunosuppressive polymers. Nat Biomed Eng.
  15. Wat, L.W., Chowdhury, Z.S., Millington, J.W., Biswas, P., and Rideout, E.J. (2021). Sex determination gene transformer regulates the male-female difference in Drosophila fat storage via the adipokinetic hormone pathway. eLife 10.
  16. Wong, A.K.O., Young, B.P., and Loewen, C.J.R. (2021a). Ist2 recruits the lipid transporters Osh6/7 to ER-PM contacts to maintain phospholipid metabolism. The Journal of cell biology 220.
  17. Wong, T.H., Khater, I.M., Joshi, B., Shahsavari, M., Hamarneh, G., and Nabi, I.R. (2021b). Single molecule network analysis identifies structural changes to caveolae and scaffolds due to mutation of the caveolin-1 scaffolding domain. Scientific reports 11, 7810.
  18. Abbina, S., Takeuchi, L.E., Anilkumar, P., Yu, K., Rogalski, J.C., Shenoi, R.A., Constantinescu, I., and Kizhakkedathu, J.N. (2020). Blood circulation of soft nanomaterials is governed by dynamic remodeling of protein opsonins at nano-biointerface. Nature communications 11, 3048.
  19. Adams, A., and Vogl, W. (2020). Knockdown of IP3R1 Disrupts TBC-ER Contact Sites and the Morphology of Apical Processes Encapsulating Late Spermatids. Biology of reproduction.
  20. Bai, L., Huan, S., Zhao, B., Zhu, Y., Esquena, J., Chen, F., Gao, G., Zussman, E., Chu, G., and Rojas, O.J. (2020). All-Aqueous Liquid Crystal Nanocellulose Emulsions with Permeable Interfacial Assembly. ACS nano 14, 13380-13390.
  21. Cardoen, B., Yedder, H.B., Sharma, A., Chou, K.C., Nabi, I.R., and Hamarneh, G. (2020). ERGO: Efficient Recurrent Graph Optimized Emitter Density Estimation in Single Molecule Localization Microscopy. IEEE transactions on medical imaging 39, 1942-1956.
  22. Long, R.K.M., Moriarty, K.P., Cardoen, B., Gao, G., Vogl, A.W., Jean, F., Hamarneh, G., and Nabi, I.R. (2020). Super resolution microscopy and deep learning identify Zika virus reorganization of the endoplasmic reticulum. Scientific reports 10, 20937.
  23. Pournia, F., Dang-Lawson, M., Choi, K., Mo, V., Lampe, P.D., and Matsuuchi, L. (2020). Identification of serine residues in the Connexin43 carboxyl tail important for BCR-mediated spreading of B-lymphocytes. Journal of cell science.
  24. Wat, L.W., Chao, C., Bartlett, R., Buchanan, J.L., Millington, J.W., Chih, H.J., Chowdhury, Z.S., Biswas, P., Huang, V., Shin, L.J., et al. (2020). A role for triglyceride lipase brummer in the regulation of sex differences in Drosophila fat storage and breakdown. PLoS biology 18, e3000595.
  25. Bolger-Munro, M., Choi, K., Scurll, J.M., Abraham, L., Chappell, R.S., Sheen, D., Dang-Lawson, M., Wu, X., Priatel, J.J., Coombs, D., et al. (2019). Arp2/3 complex-driven spatial patterning of the BCR enhances immune synapse formation, BCR signaling and B cell activation. eLife 8.
  26. Cardoen, B., Yedder, H.B., Sharma, A., Chou, K.C., Nabi, I.R., and Hamarneh, G. (2019). ERGO: Efficient Recurrent Graph Optimized Emitter Density Estimation in Single Molecule Localization Microscopy. IEEE transactions on medical imaging.
  27. Gao, G., Zhu, C., Liu, E., and Nabi, I.R. (2019). Reticulon and CLIMP-63 regulate nanodomain organization of peripheral ER tubules. PLoS biology 17, e3000355.
  28. Khater, I.M., Aroca-Ouellette, S.T., Meng, F., *Nabi, I.R., and *Hamarneh, G. (2019a). Caveolae and scaffold detection from single molecule localization microscopy data using deep learning. PloS one 14, e0211659.
  29. Khater, I.M., Aroca-Ouellette, S.T., Meng, F., Nabi, I.R., and Hamarneh, G. (2019b). Caveolae and scaffold detection from single molecule localization microscopy data using deep learning. PloS one 14, e0211659.
  30. Khater, I.M., Liu, Q., Chou, K.C., Hamarneh, G., and Nabi, I.R. (2019c). Super-resolution modularity analysis shows polyhedral caveolin-1 oligomers combine to form scaffolds and caveolae. Scientific reports 9, 9888.
  31. Khater, I.M., Meng, F., Nabi, I.R., and Hamarneh, G. (2019d). Identification of caveolin-1 domain signatures via machine learning and graphlet analysis of single-molecule super-resolution data. Bioinformatics 35, 3468-3475.
  32. Khater, I.M., Meng, F., Wong, T.H., Nabi, I.R., and Hamarneh, G. (2018). Super Resolution Network Analysis Defines the Molecular Architecture of Caveolae and Caveolin-1 Scaffolds. Scientific reports 8, 9009.
  33. Liu, Q., Chen, L., Aguilar, H.C., and Chou, K.C. (2018). A stochastic assembly model for Nipah virus revealed by super-resolution microscopy. Nature communications 9, 3050.
  34. Wang, J.C., Bolger-Munro, M., and Gold, M.R. (2018a). Visualizing the Actin and Microtubule Cytoskeletons at the B-cell Immune Synapse Using Stimulated Emission Depletion (STED) Microscopy. Journal of visualized experiments : JoVE.
  35. Wang, J.C., Bolger-Munro, M., and Gold, M.R. (2018b). Imaging the Interactions Between B Cells and Antigen-Presenting Cells. Methods in molecular biology 1707, 131-161.
  36. Freeman, S.A., Christian, S., Austin, P., Iu, I., Graves, M.L., Huang, L., Tang, S., Coombs, D., Gold, M.R., and Roskelley, C.D. (2017). Applied stretch initiates directional invasion through the action of Rap1 GTPase as a tension sensor. Journal of cell science 130, 152-163.
  37. Meng, F., Saxena, S., Liu, Y., Joshi, B., Wong, T.H., Shankar, J., Foster, L.J., Bernatchez, P., and Nabi, I.R. (2017). The phospho-caveolin-1 scaffolding domain dampens force fluctuations in focal adhesions and promotes cancer cell migration. Molecular biology of the cell 28, 2190-2201.
  38. Swayampakula, M., McDonald, P.C., Vallejo, M., Coyaud, E., Chafe, S.C., Westerback, A., Venkateswaran, G., Shankar, J., Gao, G., Laurent, E.M.N., et al. (2017). The interactome of metabolic enzyme carbonic anhydrase IX reveals novel roles in tumor cell migration and invadopodia/MMP14-mediated invasion. Oncogene 36, 6244-6261.
  39. Wang, J.C., Lee, J.Y., Christian, S., Dang-Lawson, M., Pritchard, C., Freeman, S.A., and Gold, M.R. (2017). The Rap1-cofilin-1 pathway coordinates actin reorganization and MTOC polarization at the B cell immune synapse. Journal of cell science 130, 1094-1109.
  40. Freeman, S.A., Jaumouille, V., Choi, K., Hsu, B.E., Wong, H.S., Abraham, L., Graves, M.L., Coombs, D., Roskelley, C.D., Das, R., et al. (2015). Erratum: Toll-like receptor ligands sensitize B-cell receptor signalling by reducing actin-dependent spatial confinement of the receptor. Nature communications 6, 7015.
  41. Li, L., Gao, G., Shankar, J., Joshi, B., Foster, L.J., and Nabi, I.R. (2015). p38 MAP kinase-dependent phosphorylation of the Gp78 E3 ubiquitin ligase controls ER-mitochondria association and mitochondria motility. Molecular biology of the cell 26, 3828-3840.
  42. Meng, F., Joshi, B., and Nabi, I.R. (2015). Galectin-3 Overrides PTRF/Cavin-1 Reduction of PC3 Prostate Cancer Cell Migration. PloS one 10, e0126056.
  43. Austin, P., Freeman, S.A., Gray, C.A., Gold, M.R., Vogl, A.W., Andersen, R.J., Roberge, M., and Roskelley, C.D. (2013). The invasion inhibitor sarasinoside A1 reverses mesenchymal tumor transformation in an E-cadherin-independent manner. Molecular cancer research : MCR 11, 530-540.
  44. Fu, M., St-Pierre, P., Shankar, J., Wang, P.T., Joshi, B., and Nabi, I.R. (2013). Regulation of mitophagy by the Gp78 E3 ubiquitin ligase. Molecular biology of the cell 24, 1153-1162.
  45. Shankar, J., Kojic, L.D., St-Pierre, P., Wang, P.T., Fu, M., Joshi, B., and Nabi, I.R. (2013). Raft endocytosis of AMF regulates mitochondrial dynamics through Rac1 signaling and the Gp78 ubiquitin ligase. Journal of cell science 126, 3295-3304.
  46. Zhou, L., Graves, M., MacDonald, G., Cipollone, J., Mueller, C.R., and Roskelley, C.D. (2013). Microenvironmental regulation of BRCA1 gene expression by c-Jun and Fra2 in premalignant human ovarian surface epithelial cells. Molecular cancer research : MCR 11, 272-281.
  47. Boscher, C., Zheng, Y.Z., Lakshminarayan, R., Johannes, L., Dennis, J.W., Foster, L.J., and Nabi, I.R. (2012). Galectin-3 protein regulates mobility of N-cadherin and GM1 ganglioside at cell-cell junctions of mammary carcinoma cells. The Journal of biological chemistry 287, 32940-32952.
  48. Joshi, B., Bastiani, M., Strugnell, S.S., Boscher, C., Parton, R.G., and Nabi, I.R. (2012). Phosphocaveolin-1 is a mechanotransducer that induces caveola biogenesis via Egr1 transcriptional regulation. The Journal of cell biology 199, 425-435.
  49. St-Pierre, P., Dang, T., Joshi, B., and Nabi, I.R. (2012). Peripheral endoplasmic reticulum localization of the Gp78 ubiquitin ligase activity. Journal of cell science 125, 1727-1737.